seminar

Imamoto lab Journal Club

This is the list of papers presented and discussed in the lab Journal Club during the weekly seminar.

You can also browse content from previous years in the links below.

2018

　　

Range, routing and kinetics of rod signaling in primate retina.
Grimes WN, Baudin J, Azevedo AW, Rieke F.
Elife2018 Oct 9;7. pii: e38281. doi: 10.7554

 　　

Expanding the Optogenetics Toolkit by Topological Inversion of Rhodopsins.
Brown J, Behnam R, Coddington L, Tervo DGR, Martin K, Proskurin M, Kuleshova E, Park J, Phillips J, Bergs ACF, Gottschalk A, Dudman JT, Karpova AY.
Cell2018 Nov 1;175(4):1131-1140.e11. doi: 10.1016

 　　

Hub-organized parallel circuits of central circadian pacemaker neurons for visual photoentrainment in Drosophila.
Li MT, Cao LH, Xiao N, Tang M, Deng B, Yang T, Yoshii T, Luo DG.
Nat Commun2018 Oct 12;9(1):4247. doi: 10.1038

 　　

Cyclic-Nucleotide- and HCN-Channel-Mediated Phototransduction in Intrinsically Photosensitive Retinal Ganglion Cells.
Jiang Z, Yue WWS, Chen L, Sheng Y, Yau KW.
Cell2018 Oct 18;175(3):652-664.e12. doi: 10.1016

 　　

Thyroid hormone signaling specifies cone subtypes in human retinal organoids.
Eldred KC, Hadyniak SE, Hussey KA, Brenerman B, Zhang PW, Chamling X, Sluch VM, Welsbie DS, Hattar S, Taylor J, Wahlin K, Zack DJ, Johnston RJ Jr.
Science2018 Oct 12;362(6411). pii: eaau6348. doi: 10.1126/science.aau6348.

 　　

Crystal structure of the natural anion-conducting channelrhodopsin GtACR1.
Kim YS, Kato HE, Yamashita K, Ito S, Inoue K, Ramakrishnan C, Fenno LE, Evans KE, Paggi JM, Dror RO, Kandori H, Kobilka BK, Deisseroth K.
Nature2018 Sep;561(7723):343-348. doi: 10.1038/s41586-018-0511-6.

 　　

Structural mechanisms of selectivity and gating in anion channelrhodopsins.
Kato HE, Kim YS, Paggi JM, Evans KE, Allen WE, Richardson C, Inoue K, Ito S, Ramakrishnan C, Fenno LE, Yamashita K, Hilger D, Lee SY, Berndt A, Shen K, Kandori H, Dror RO, Kobilka BK, Deisseroth K.
Nature2018 Sep;561(7723):349-354. doi: 10.1038/s41586-018-0504-5.

 　　

Zebrafish Differentially Process Color across Visual Space to Match Natural Scenes.
Zimmermann MJY, Nevala NE, Yoshimatsu T, Osorio D, Nilsson DE, Berens P, Baden T.
Current Biology2018 Jul 9;28(13):2018-2032.e5. doi: 10.1016/j.cub.2018.04.075.

 　　

Human Blue Cone Opsin Regeneration Involves Secondary Retinal Binding with Analog Specificity.
Srinivasan S, Fernandez-Sampedro MA, Morillo M, Ramon E, Jimenez-Roses M, Cordomi A, Garriga P.
Biophysical Journal2018 Mar 27;114(6):1285-1294. doi: 10.1016/j.bpj.2018.01.032.

 　　

Identification of the key determinant of the transport promiscuity in Na+-translocating rhodopsins.
Mamedov AM, Bertsova YV, Anashkin VA, Mamedov MD, Baykov AA, Bogachev AV.
Biochem Biophys Res Commun.2018 May 15;499(3):600-604. doi: 10.1016/j.bbrc.2018.03.196.

 　　

Cryo-EM structure of human rhodopsin bound to an inhibitory G protein.
Kang Y, Kuybeda O, de Waal PW, Mukherjee S, Van Eps N, Dutka P, Zhou XE, Bartesaghi A, Erramilli S, Morizumi T, Gu X, Yin Y, Liu P, Jiang Y, Meng X, Zhao G, Melcher K, Ernst OP, Kossiakoff AA, Subramaniam S, Xu HE.
Nature.2018 Jun;558(7711):553-558. doi: 10.1038/s41586-018-0215-y.

The M5 Cell: A Color-Opponent Intrinsically Photosensitive Retinal Ganglion Cell.
Stabio ME, Sabbah S, Quattrochi LE, Ilardi MC, Fogerson PM, Leyrer ML, Kim MT, Kim I, Schiel M, Renna JM, Briggman KL, Berson DM.
Neuron.2018 Jan 3;97(1):150-163.e4. doi: 10.1016/j.neuron.2017.11.030.

A novel small molecule chaperone of rod opsin and its potential therapy for retinal degeneration.
Chen Y, Chen Y, Jastrzebska B, Golczak M, Gulati S, Tang H, Seibel W, Li X, Jin H, Han Y, Gao S, Zhang J, Liu X, Heidari-Torkabadi H, Stewart PL, Harte WE, Tochtrop GP, Palczewski K.
Nat Commun. 2018 May 17;9(1):1976. doi: 10.1038/s41467-018-04261-1.

A gonad-expressed opsin mediates light-induced spawning in the jellyfish Clytia.
Quiroga Artigas G, Lapebie P, Leclere L, Takeda N, Deguchi R, Jekely G, Momose T, Houliston E.
Elife. 2018 Jan 5;7. pii: e29555. doi: 10.7554/eLife.29555.

LRIT1 Modulates Adaptive Changes in Synaptic Communication of Cone Photoreceptors.
Sarria I, Cao Y, Wang Y, Ingram NT, Orlandi C, Kamasawa N, Kolesnikov AV, Pahlberg J, Kefalov VJ, Sampath AP, Martemyanov KA.
Cell Rep.2018 Mar 27;22(13):3562-3573. doi: 10.1016/j.celrep.2018.03.008.

A unique choanoflagellate enzyme rhodopsin exhibits light-dependent cyclic nucleotide phosphodiesterase activity.
Yoshida K, Tsunoda SP, Brown LS, Kandori H.
J Biol Chem. 2017 May 5;292(18):7531-7541. doi: 10.1074/jbc.M117.775569.

Purification and Characterization of RhoPDE, a Retinylidene/Phosphodiesterase Fusion Protein and Potential Optogenetic Tool from the Choanoflagellate Salpingoeca rosetta.
Lamarche LB, Kumar RP, Trieu MM, Devine EL, Cohen-Abeles LE, Theobald DL, Oprian DD.
Biochemistry.2017 Oct 31;56(43):5812-5822. doi: 10.1021/acs.biochem.7b00519. Epub 2017 Oct 18.

Evidence for functional pre-coupled complexes of receptor heteromers and adenylyl cyclase.
Navarro G, Cordomi A, Casado-Anguera V, Moreno E, Cai NS, Cortes A, Canela EI, Dessauer CW, Casado V, Pardo L, Lluis C, Ferre S.
Nat Commun. 2018 Mar 28;9(1):1242. doi: 10.1038/s41467-018-03522-3.

Dedicated photoreceptor pathways in Drosophila larvae mediate navigation by processing either spatial or temporal cues.
Humberg TH, Bruegger P, Afonso B, Zlatic M, Truman JW, Gershow M, Samuel A, Sprecher SG.
Nat Commun. 2018 Mar 28;9(1):1260. doi: 10.1038/s41467-018-03520-5.

Proprioceptive Opsin Functions in Drosophila Larval Locomotion.
Zanini D, Giraldo D, Warren B, Katana R, Andres M, Reddy S, Pauls S, Schwedhelm-Domeyer N, Geurten BRH, Gopfert MC.
Neuron.2018 Apr 4;98(1):67-74.e4. doi: 10.1016/j.neuron.2018.02.028.

Evidence for a vibrational phase-dependent isotope effect on the photochemistry of vision.
Schnedermann C, Yang X, Liebel M, Spillane KM, Lugtenburg J, Fernandez I, Valentini A, Schapiro I, Olivucci M, Kukura P, Mathies RA.
Nat Chem. 2018 Apr;10(4):449-455. doi: 10.1038/s41557-018-0014-y.