seminar

Imamoto lab Journal Club

This is the list of papers presented and discussed in the lab Journal Club during the weekly seminar.

You can also browse content from previous years in the links below.

2019

Crystal structure of heliorhodopsin.
Shihoya W, Inoue K, Singh M, Konno M, Hososhima S, Yamashita K, Ikeda K, Higuchi A, Izume T, Okazaki S, Hashimoto M, Mizutori R, Tomida S, Yamauchi Y, Abe-Yoshizumi R, Katayama K, Tsunoda SP, Shibata M, Furutani Y, Pushkarev A, Béjà O, Uchihashi T, Kandori H, Nureki O.
Nature 2019 Oct;574(7776):132-136. doi: 10.1038/s41586-019-1604-6.

Raftophilic rhodopsin-clusters offer stochastic platforms for G protein signalling in retinal discs.
Hayashi F, Saito N, Tanimoto Y, Okada K, Morigaki K, Seno K, Maekawa S.
Commun biol.2019 Jun 14;2:209. doi: 10.1038/s42003-019-0459-6.

Parallel processing of polarization and intensity information in fiddler crab vision.
Smithers SP, Roberts NW, How MJ.
Sci adv.2019 Aug 21;5(8):eaax3572. doi: 10.1126/sciadv.aax3572.

Horsefly object-directed polarotaxis is mediated by a stochastically distributed ommatidial subtype in the ventral retina.
Meglič A, Ilić M, Pirih P, Škorjanc A, Wehling MF, Kreft M, Belušič G.
Proc Natl Acad Sci U S A. 2019 Oct 22;116(43):21843-21853. doi: 10.1073/pnas.1910807116. .

Restoration of visual function by transplantation of optogenetically engineered photoreceptors.
Garita-Hernandez M, Lampič M, Chaffiol A, Guibbal L, Routet F, Santos-Ferreira T, Gasparini S, Borsch O, Gagliardi G, Reichman S, Picaud S, Sahel JA, Goureau O, Ader M, Dalkara D, Duebel J.
Nat Commun.2019 Oct 4;10(1):4524. doi: 10.1038/s41467-019-12330-2.

Light-regulated collective contractility in a multicellular choanoflagellate.
Brunet T, Larson BT, Linden TA, Vermeij MJA, McDonald K, King N.
Science2019 Oct 18;366(6463):326-334. doi: 10.1126/science.aay2346.

Sour Sensing from the Tongue to the Brain.
Zhang J, Jin H, Zhang W, Ding C, O'Keeffe S, Ye M, Zuker CS.
Cell 2019 Oct 3;179(2):392-402.e15. doi: 10.1016/j.cell.2019.08.031.

An evolutionarily conserved gene family encodes proton-selective ion channels.
Tu YH, Cooper AJ, Teng B, Chang RB, Artiga DJ, Turner HN, Mulhall EM, Ye W,Smith AD, Liman ER.
Science 2018 Mar 2;359(6379):1047-1050. doi: 10.1126/science.aao3264.

Chemical and structural analysis of a photoactive vertebrate cryptochrome from pigeon.
Zoltowski BD, Chelliah Y, Wickramaratne A, Jarocha L, Karki N, Xu W, Mouritsen H, Hore PJ, Hibbs RE, Green CB, Takahashi JS.
Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19449-19457. doi: 10.1073/pnas.1907875116.

Human nonvisual opsin 3 regulates pigmentation of epidermal melanocytes through functional interaction with melanocortin 1 receptor..
Ozdeslik RN, Olinski LE, Trieu MM, Oprian DD, Oancea E.
Proc Natl Acad Sci U S A. 2019 Jun 4;116(23):11508-11517. doi: 10.1073/pnas.1902825116.

Stereospecific modulation of dimeric rhodopsin.
Getter T, Gulati S, Zimmerman R, Chen Y, Vinberg F, Palczewski K
FASEB J.　2019 May 23:fj201900443RR. doi: 10.1096/fj.201900443RR.

Mammalian Near-Infrared Image Vision through Injectable and Self-Powered Retinal Nanoantennae.
Ma Y, Bao J, Zhang Y, Li Z, Zhou X, Wan C, Huang L, Zhao Y, Han G, Xue T.
Cell　2019 Apr 4;177(2):243-255.e15. doi: 10.1016/j.cell.2019.01.038.

Distinct G protein-coupled receptor phosphorylation motifs modulate arrestin affinity and activation and global conformation.
Mayer D, Damberger FF, Samarasimhareddy M, Feldmueller M, Vuckovic Z, Flock T, Bauer B, Mutt E, Zosel F, Allain FHT, Standfuss J, Schertler GFX, Deupi X, Sommer ME, Hurevich M, Friedler A, Veprintsev DB.
Nat Commun.　2019 Mar 1;10(1):1261. doi: 10.1038/s41467-019-09204-y.

Unifying photocycle model for light adaptation and temporal evolution of cation conductance in channelrhodopsin-2.
Kuhne J, Vierock J, Tennigkeit SA, Dreier MA, Wietek J, Petersen D, Gavriljuk K, El-Mashtoly SF, Hegemann P, Gerwert K.
Proc Natl Acad Sci U S A.　2019 May 7;116(19):9380-9389. doi: 10.1073/pnas.1818707116. Epub 2019 Apr 19.

Light-Driven Regeneration of Cone Visual Pigments through a Mechanism Involving RGR Opsin in Müller Glial Cells.
Morshedian A, Kaylor JJ, Ng SY, Tsan A, Frederiksen R, Xu T, Yuan L, Sampath AP, Radu RA, Fain GL, Travis GH.
Neuron 2019 Apr 22.doi: 10.1016/j.neuron.2019.04.004.

An opsin 5-dopamine pathway mediates light-dependent vascular development in the eye.
Nguyen MT, Vemaraju S, Nayak G, Odaka Y, Buhr ED, Alonzo N, Tran U, Batie M, Upton BA, Darvas M, Kozmik Z, Rao S, Hegde RS, Iuvone PM, Van Gelder RN, Lang RA.
Nat Cell Biol.　2019　Apr;21(4):420-429. doi: 10.1038/s41556-019-0301-x.

Impaired Circadian Photoentrainment in Opn5-Null Mice.
Ota W, Nakane Y, Hattar S, Yoshimura T.
iScience 2018 Aug 31;6:299-305. doi: 10.1016/j.isci.2018.08.010.

The Two-Photon Reversible Reaction of the Bistable Jumping Spider Rhodopsin-1.
Ehrenberg D, Varma N, Deupi X, Koyanagi M, Terakita A, Schertler GFX, Heberle J, Lesca E.
Biophys J.　2019 Apr 2;116:1248-1258. doi: 10.1016/j.bpj.2019.02.025.

Color Processing in the Early Visual System of Drosophila.
Schnaitmann C, Haikala V, Abraham E, Oberhauser V, Thestrup T, Griesbeck O, Reiff DF.
Cell　2018 Jan 11;172(1-2):318-330.e18. doi: 10.1016/j.cell.2017.12.018.

Tuning the electronic absorption of protein-embedded all-trans-retinal.
Wang W, Nossoni Z, Berbasova T, Watson CT, Yapici I, Lee KS, Vasileiou C, Geiger JH, Borhan B.
Science　2012 Dec 7;338(6112):1340-3. doi: 10.1126/science.1226135.

Mimicking Microbial Rhodopsin Isomerization in a Single Crystal.
Ghanbarpour A, Nairat M, Nosrati M, Santos EM, Vasileiou C, Dantus M, Borhan B, Geiger JH.
J Am Chem Soc　J Am Chem Soc. 2018 Dec 22. doi: 10.1021/jacs.8b12493.