papers

Publications from Shichida lab

Blow is a list of pepers published on the research carried out in our lab.

We have provided links to PubMed, a data base of articles on life science and biomedical topics. You can read the abstract in PubMed and download a pdf version by following the links in PubMed. For more information or for questions about the articles contact the authors by email

2021-2025  /   2016-2020  /   2011-2015  /   2006-2010  /  

2001-2005  /  

2024

Light-modulated neural control of sphincter regulation in the evolution of through-gut
Junko Yaguchi, Kazumi Sakai, Atsushi Horiuchi, Takashi Yamamoto, Takahiro Yamashita, Shunsuke Yaguchi
Nat. Commun.2024 Oct 18;15(1):8881. doi: 10.1038/s41467-024-53203-7. PMID: 39424783

Press Release

 

Functional diversification process of opsin genes for teleost visual and pineal photoreceptions
Chihiro Fujiyabu, Fuki Gyoja, Keita Sato, Emi Kawano-Yamashita, Hideyo Ohuchi, Takehiro G Kusakabe, Takahiro Yamashita
Cell Mol Life Sci. 2024 Oct 8;81(1):428. doi: 10.1007/s00018-024-05461-3. PMID: 39379743

Press Release

 

Convergent mechanism underlying the acquisition of vertebrate scotopic vision
Keiichi Kojima, Masataka Yanagawa, Yasushi Imamoto, Yumiko Yamano, Akimori Wada, Yoshinori Shichida, Takahiro Yamashita
J Biol. Chem. 2024 Mar 16;300(4):107175. doi: 10.1016/j.jbc.2024.107175. Online ahead of print. PMID: 38499150

 

Reviews and Other Publications

Introduction Article by Kyoto University Medical Science and Business Liaison Organization
Yamashita T, Tsunoda SP (2024) "Welcome to the borderless rhodopsin world" Biophys Physicobiol.

 

2023

Mammalian type Opsin 5 preferentially activates G14 in Gq-type G proteins triggering intracellular calcium response
Keita Sato, Takahiro Yamashita, Hideyo Ohuchi
J Biol. Chem. 2023 Jul 7;105020. doi: 10.1016/j.jbc.2023.105020. Online ahead of print. PMID: 37423300

 

Diversification processes of teleost intron-less opsin genes
Chihiro Fujiyabu, Keita Sato, Hideyo Ohuchi, Takahiro Yamashita
J Biol. Chem. 2023 Jun 7;299(7):104899. doi: 10.1016/j.jbc.2023.104899. PMID: 37295773

 

Chromophore Structure in an Inactive State of a Novel Photosensor Protein Opn5L1: Resonance Raman Evidence for the Formation of a Deprotonated Adduct at the 11th Carbon Atom
Misao Mizuno, Keita Sato, Takahiro Yamashita, Kazumi Sakai, Yasushi Imamoto, Yumiko Yamano, Akimori Wada, Hideyo Ohuchi, Yoshinori Shichida, Yasuhisa Mizutani
J Phys Chem B. 2023 Mar 16;127(10):2169-2176. doi: 10.1021/acs.jpcb.2c08780. Epub 2023 Mar 1. PMID: 36857774

 

Role of Monomer/Tetramer Equilibrium of Rod Visual Arrestin in the Interaction with Phosphorylated Rhodopsin
Yasushi Imamoto, Keiichi Kojima, Ryo Maeda, Yoshinori Shichida, Toshihiko Oka
Int. J. Mol. Sci. 2023 Mar 4;24(5):4963. doi: 10.3390/ijms24054963. PMID: 36902393

 

The medaka mutant deficient in eyes shut homolog exhibits opsin transport defects and enhanced autophagy in retinal photoreceptors
Sato K, Liu Y, Yamashita T, Ohuchi H.
Cell Tissue Res. 2023 Feb;391(2):249-267. doi: 10.1007/s00441-022-03702-0. Epub 2022 Nov 22. PMID: 36418571.

 

Reviews and Other Publications

Yamashita T, Wada A (2023) 「新規な光異性化経路を有する微生物型ロドプシンの発見」 ビタミン 97, 374-7.

 

2022

Convergent evolutionary counterion displacement of bilaterian opsins in ciliary cells
Sakai K, Ikeuchi H, Fujiyabu C, Imamoto Y, Yamashita T.
Cell Mol Life Sci. 2022 Aug 24;79(9):493. doi: 10.1007/s00018-022-04525-6. PMID: 36001156.
Press Release

 

Creation of photocyclic vertebrate rhodopsin by single amino acid substitution
Sakai K, Shichida Y, Imamoto Y, Yamashita T.
Elife.2022 Feb 24;11:e75979. doi: 10.7554/eLife.75979. PMID: 35199641
Press Release

Research introduction article

Research introduction article (Chinese)

Amino acid residue at position 188 determines the UV-sensitive bistable property of vertebrate non-visual opsin Opn5
Fujiyabu C, Sato K, Nishio Y, Imamoto Y, Ohuchi H, Shichida Y, Yamashita T.
Commun Biol.2022 Jan 18;5(1):63. doi: 10.1038/s42003-022-03010-x. PMID: 35042952

 

Reviews and Other Publications

酒井佳寿美、山下高廣 (2022) 「サイクリックAMP濃度を光で一過的に操作する分子ツールの開発」 医学のあゆみ 283, 1080-1.
小島慧一、柳川正隆、山下高廣（2022） 「カエルとヤモリが夜でも色が分かるワケ」 　比較生理生化学 39, 122-31.
酒井佳寿美、山下高廣 (2022) 「１アミノ酸変異によって光サイクル型視覚ロドプシンを創製する」 　生物物理 62, 351-3.
山下高廣（2022） 「夜の世界をカラフルに見るニホンヤモリ」 　someone（リバネス出版）59, 29.

 

 

2021

Evolutionary adaptation of visual pigments in geckos for their photic environment
Kojima K, Matsutani Y, Yanagawa M, Imamoto Y, Yamano Y, Wada A, Shichida Y, Yamashita T.
Sci Adv.21 Oct;7(40):eabj1316. doi: 10.1126/sciadv.abj1316. Epub 2021 Oct 1. PMID: 34597144
Press Release

Research introduction article

Research introduction article (Japanese)

Research introduction article (Chinese)

Reviews and Other Publications

山下高廣（2021） 「Ｇ蛋白質共役受容体と紫外光受容蛋白質：紫外線をヒトは感じ るか？」 脳神経内科 94, 476-481.