seminar

Shichida lab Journal Club

This is the list of papers presented and discussed in the lab Journal Club during the weekly seminar.

You can also browse content from previous years in the links below.

2013  /  2012  /  2011

2014

Melanopsin mediates light-dependent relaxation in blood vessels
Sikka G, Hussmann GP, Pandey D, Cao S, Hori D, Park JT, Steppan J, Kim JH, Barodka V, Myers AC, Santhanam L, Nyhan D, Halushka MK, Koehler RC, Snyder SH, Shimoda LA, Berkowitz DE
PNAS 2014 Dec 16;111(50):17977-82

Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution
Yan Z, Bai XC, Yan C, Wu J, Li Z, Xie T, Peng W, Yin CC, Li X, Scheres SH, Shi Y, Yan N
Nature 2015 Jan 1;517(7532):50-5

Human infrared vision is triggered by two-photon chromophore isomerization
Palczewska G, Vinberg F, Stremplewski P, Bircher MP, Salom D, Komar K, Zhang J, Cascella M, Wojtkowski M, Kefalov VJ, Palczewski K.
PNAS 2014 Dec 16;111(50):E5445-54

Visualization of arrestin recruitment by a G-protein-coupled receptor
Shukla AK, Westfield GH, Xiao K, Reis RI, Huang LY, Tripathi-Shukla P, Qian J, Li S, Blanc A, Oleskie AN, Dosey AM, Su M, Liang CR, Gu LL, Shan JM, Chen X, Hanna R, Choi M, Yao XJ, Klink BU, Kahsai AW, Sidhu SS, Koide S, Penczek PA, Kossiakoff AA, Woods VL Jr, Kobilka BK, Skiniotis G, Lefkowitz RJ
Nature 2014 Aug 14;512(7513):218-22

Vertebrate cone opsins enable sustained and highly sensitive rapid control of Gi/o signaling in anxiety circuitry
Masseck OA, Spoida K, Dalkara D, Maejima T, Rubelowski JM, Wallhorn L, Deneris ES, Herlitze S
Neuron 2014 Mar 19;81(6):1263-73

Melatonin signaling controls circadian swimming behavior in marine zooplankton
Tosches MA, Bucher D, Vopalensky P, Arendt D
Cell 2014 Sep 25;159(1):46-57

Müller cells separate between wavelengths to improve day vision with minimal effect upon night vision
Labin AM, Safuri SK, Ribak EN, Perlman I
Nat Commun 2014 Jul 8;5:4319

Biological sunscreens tune polychromatic ultraviolet vision in mantis shrimp
Bok MJ, Porter ML, Place AR, Cronin TW
Curr Biol 2014 Jul 21;24(14):1636-42

Onecut1 and Onecut2 redundantly regulate early retinal cell fates during development
Sapkota D, Chintala H, Wu F, Fliesler SJ, Hu Z, Mu X
PNAS 2014 Sep 30;111(39):E4086-95

Gαs regulates the post-endocytic sorting of G protein-coupled receptors
Rosciglione S, Thériault C, Boily MO, Paquette M, Lavoie C.
Nat Commun 2014 Aug 4;5:4556

A role for melanopsin in alpha retinal ganglion cells and contrast detection
Schmidt TM, Alam NM, Chen S, Kofuji P, Li W, Prusky GT, Hattar S.
Neuron 2014 May 21;82(4):781-8

Local photic entrainment of the retinal circadian oscillator in the absence of rods, cones, and melanopsin
Buhr ED, Van Gelder RN
PNAS 2014 Jun 10;111(23):8625-30

Rhodopsin TM6 Can Interact with Two Separate and Distinct Sites on Arrestin: Evidence for Structural Plasticity and Multiple Docking Modes in Arrestin
Sinha A, Jones Brunette AM, Fay JF, Schafer CT, Farrens DL
Biochemistry 2014 May 27;53(20):3294-307

Neurokinin B and dynorphin A in kisspeptin neurons of the arcuate nucleus participate in generation of periodic oscillation of neural activity driving pulsatile gonadotropin-releasing hormone secretion in the goat
Wakabayashi Y, Nakada T, Murata K, Ohkura S, Mogi K, Navarro VM, Clifton DK, Mori Y, Tsukamura H, Maeda K, Steiner RA, Okamura H
J Neurosci 2010 Feb 24;30(8):3124-32

Regulation of gonadotropin-releasing hormone secretion by kisspeptin/dynorphin/neurokinin B neurons in the arcuate nucleus of the mouse
Navarro VM, Gottsch ML, Chavkin C, Okamura H, Clifton DK, Steiner RA
J Neurosci 2009 Sep 23;29(38):11859-66

Physiological basis of phototaxis to near-infrared light in Nephotettix cincticeps
Wakakuwa M, Stewart F, Matsumoto Y, Matsunaga S, Arikawa K
J Comp Physiol A 2014 Jun;200(6):527-36

Transmission from the dominant input shapes the stereotypic ratio of photoreceptor inputs onto horizontal cells
Yoshimatsu T, Williams PR, D'Orazi FD, Suzuki SC, Fadool JM, Allison WT, Raymond PA, Wong RO
Nat Commun 2014 May 15;5:3699

A Rhodopsin-Guanylyl Cyclase Gene Fusion Functions in Visual Perception in a Fungus
Avelar GM, Schumacher RI, Zaini PA, Leonard G, Richards TA, Gomes SL
Curr Biol 2014 Jun 2;24(11):1234-1240

Comparison of the isomerization mechanisms of human melanopsin and invertebrate and vertebrate rhodopsins
Rinaldi S, Melaccio F, Gozem S, Fanelli F, Olivucci M
PNAS 2014 Feb 4;111(5):1714-9

Differentiation of opioid drug effects by hierarchical multi-site phosphorylation
Just S, Illing S, Trester-Zedlitz M, Lau EK, Kotowski SJ, Miess E, Mann A, Doll C, Trinidad JC, Burlingame AL, von Zastrow M, Schulz S.
Mol Pharmacol 2013 Mar;83(3):633-9

Conversion of channelrhodopsin into a light-gated chloride channel
Wietek J, Wiegert JS, Adeishvili N, Schneider F, Watanabe H, Tsunoda SP, Vogt A, Elstner M, Oertner TG, Hegemann P
Science 2014 Apr 25;344(6182):409-12

Structure-guided transformation of channelrhodopsin into a light-activated chloride channel
Berndt A, Lee SY, Ramakrishnan C, Deisseroth K.
Science 2014 Apr 25;344(6182):420-4

Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria
Yoshizawa S, Kumagai Y, Kim H, Ogura Y, Hayashi T, Iwasaki W, Delong EF, Kogure K.
PNAS 2014 May 6;111(18):6732-7

ATP-binding cassette transporter ABCA4 and chemical isomerization protect photoreceptor cells from the toxic accumulation of excess 11-cis-retinal
Quazi F, Molday RS
Proc Natl Acad Sci U S A 2014 Apr 1;111(13):5024-9

ABCA4 is an N-retinylidene-phosphatidylethanolamine and phosphatidylethanolamine importer
Quazi F, Lenevich S, Molday RS
Nat Commun　2012 Jun 26;3:925

Optical control of muscle function by transplantation of stem cell-derived motor neurons in mice
Bryson JB, Machado CB, Crossley M, Stevenson D, Bros-Facer V, Burrone J, Greensmith L, Lieberam I
Science 2014 Apr 4;344(6179):94-7

Molecular control of δ-opioid receptor signalling
Fenalti G, Giguere PM, Katritch V, Huang XP, Thompson AA, Cherezov V, Roth BL, Stevens RC
Nature 2014 Feb 13;506(7487):191-6. Epub 2014 Jan 12.

Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron
Ferreira T, Wilson SR, Choi YG, Risso D, Dudoit S, Speed TP, Ngai J
Neuron 2014 Feb 19;81(4):847-59.

Agonist-independent GPCR activity regulates anterior-posterior targeting of olfactory sensory neurons
Nakashima A, Takeuchi H, Imai T, Saito H, Kiyonari H, Abe T, Chen M, Weinstein LS, Yu CR, Storm DR, Nishizumi H, Sakano H.
Cell 2013 Sep 12;154(6):1314-25.

Temporal dynamics of microbial rhodopsin fluorescence reports absolute membrane voltage
Hou JH, Venkatachalam V, Cohen AE
Biophys J 2014 Feb 4;106(3):639-48

Adrenaline-activated structure of β2-adrenoceptor stabilized by an engineered nanobody
Ring AM, Manglik A, Kruse AC, Enos MD, Weis WI, Garcia KC, Kobilka BK
Nature 2013 Oct 24;502(7472):575-9. Epub 2013 Sep 22.

Oxysterols direct B-cell migration through EBI2
Liu C, Yang XV, Wu J, Kuei C, Mani NS, Zhang L, Yu J, Sutton SW, Qin N, Banie H, Karlsson L, Sun S, Lovenberg TW.
Nature 2011 Jul 27;475(7357):519-23

Genetically Encoded Chemical Probes in Cells Reveal the Binding Path of Urocortin-I to CRF Class B GPCR
Coin I, Katritch V, Sun T, Xiang Z, Siu FY, Beyermann M, Stevens RC, Wang L.
Cell 2013 Dec 5;155(6):1258-69

Visual navigation in starfish: first evidence for the use of vision and eyes in starfish
Garm A, Nilsson DE
Proc Biol Sci. 2014 Jan 8;281(1777)

Signals Governing the Trafficking and Mistrafficking of a Ciliary GPCR, Rhodopsin
Lodowski, K. H. et al.
J Neurosci 33, 13621–13638 (2013)